Process TMT11 plex data in PD 1 4!
...cause somebody really did ask for it...if youve got TMT11-plex reagent on the way and are using PD 1.4, youll need to add a channel, or download this template from my DropBox.
DISCLAIMERS:
1) Tandem Mass Tags are the trademark property of Proteome Sciences. Id put trademarks every time I mention these reagents on the blog, but I dont have access to symbols without using HTML.
2) Im not a professional mass spectrometrist
3) This looks like it works fine. No promises, though!
4) I totally made up the mass in the average mass box for the method. Youve got to use HRAM to even use the TMT11-plex reagent, so I figure it doesnt matter. I took the difference between the C and N average masses in the box for the other reagents, and added that to the average for the original 131 reagent. No promises.
5) Use at your own risk!
download file now